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GrainGenes Marker Report: ABC161

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Locus
ABC161
Type
RFLP
Synonym
SynonymABC161
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Consensus-3H66
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[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 21 ]
Species
Hordeum vulgare
Probe
ABC161
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
[ Show all 6 ]
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
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Number of populations contributing to the placement of ABC161 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
In the Bowman-BC x Calicuchima-sib maps, this locus was originally assigned to a second linkage group on 3H. The distance between ABG453 and ABG4 is an average of 31.2 in the 3 GrainGenes maps containing these loci, and the linkage groups were combined at a distance of 31.2 cM.
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABC161-3H
Xabc161
Xabc161-3


Probe
ABC161
Locus
Xabc161-3
ABC161
Xabc161
ABC161-3H
Synonym
SynonymHAR35_32715
HAR35_3702
HAR35_39058
External Databases
DDBJ
EMBL
GenBank
Remarks
Steptoe malt cDNA
Type
cDNA
STS
PCR primers
TTG TCA AAC ATG GAT TGT GT
CGC CTC GGG GTC AAG ATT TA
Sequence
L43930
ABC161
ABC161-5
Linkage Group
Group 3
3
Source Species
Hordeum vulgare
Source Germplasm
Steptoe (barley)
Source Tissue
malt
Insert Size
0.6