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GrainGenes Marker Report: ABC163

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Locus
ABC163
Type
RFLP
Synonym
SynonymABC163
Chromosome
6H
Chromosome Arm
6HL
Map
[ Hide all but 1 of 16 ]
Barley-consensus-2003-6H58.3
Barley-Consensus-6H5.5
Barley-Consensus2-6H70.4
Hordeum-Bins-6H78.6
Hordeum-Consensus2005-SNP-6H81.403
Hordeum-Consensus2006-DArT-6H77.4
Hordeum-Graner2-6H70.5
Hordeum-GxH-6H91.1
Hordeum-HxT-base-6H82.3
Hordeum-NABGMP2-6H80
Hordeum-QTLConsensus-Abiotic-6H81.4
Hordeum-QTLConsensus-Agronomic-6H81.4
Hordeum-StMo-SNP-6H72.5
Hordeum-Zhedar2-FHB-QTL-6H85.5
Hv-Consensus2006-Marcel-6H71.66
Hv-Integrated2009-6H71.9
[ Show Nearby Loci ]
QTL with Locus Marker
QGms.HaTR-6H
Map Data
Barley consensus
[ Show all 18 ]
Probe
ABC163
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of ABC163 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs
ABC163A
ABC163B
Xabc163
Xabc163-6A


Probe
ABC163
Locus
ABC163B
[ Show all 7 ]
Synonym
SynonymHAR35_15282
Remarks
Steptoe malt cDNA
Type
cDNA
STS
STS primers
5' TTACGGGATCAAAGCTGAGGC
5' TGGCAGCGCTGTTGTAGGTT
STS size
252
Amplification Conditions
STS annealing temperature 55-58 oC
Sequence
BQ548055
ABC163-5
Linkage Group
Group 6
Source Species
Hordeum vulgare
Insert Size
0.3