GrainGenes Marker Report: ABC302
Locus
ABC302
Type
RFLP
Synonym
Synonym ABC302 ABC302A
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Consensus-5H 16.9
[ Show all 27 ]
[ Show Nearby Loci ]
QTL with Locus Marker
MetaQ.DON_5H_2
[ Show all 8 ]
Map Data
Barley consensus
[ Show all 27 ]
Species
Hordeum vulgare
Probe
ABC302 
Kaveh H et al. (1968) Allelic and linkage relations among genes for reaction to wheat stem rust. Agronomy Abstracts 12.
Reference
[ Hide all but 1 of 8 ] Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source
Blake, Tom 05.04.19
Remark
Number of populations contributing to the placement of ABC302 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABC302-5H ABC302A ABC302B
Probe
ABC302
Locus
ABC302 ABC302B ABC302A ABC302-5H
Synonym
Synonym HAR35_14926
Remarks
Steptoe malt cDNA
Type
cDNA STS
STS primers
5' CTGGTGCTTTCGATGCTGT
5' CTGAGTCTTCGCCATGCATA
STS size
ca. 1100
Amplification Conditions
STS annealing temperature 58-60 oC
Sequence
BQ548063 BQ548062 ABC302 ABC302-5 ABC302-3
Linkage Group
Group 7
Source Species
Hordeum vulgare
Insert Size
0.8
GrainGenes Marker Report: ABC302
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