GrainGenes Marker Report: ABG377
Locus
ABG377
Type
RFLP
Synonym
Synonym ABG377
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Consensus-3H 13.3
[ Show all 25 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QGpc.StMo-3H.2 QHd.BlE2-3H.1 QKp.StMo-3H QTw.StMo-3H QYld.StMo-3H.1
Map Data
Barley consensus
[ Show all 25 ]
Species
Hordeum vulgare
Probe
ABG377
Reference
[ Hide all but 1 of 6 ] 
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom 05.04.19 Close, Timothy J.
Remark
Number of populations contributing to the placement of ABG377 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG377-3H Xabg377 Xabg377-3
Probe
ABG377
Locus
ABG377 Xabg377-3 Xabg377 ABG377-3H
Synonym
Synonym HAR35_10264 HAR35_35535
External Databases
DDBJ EMBL GenBank
Reference
Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Remarks
Shin Ebisu16 gDNA
Type
Genomic STS
PCR primers
GTG TTA CAG CCA CCT ATT TC
GCT GCT ATG AGG AGA GAA CC
STS primers
5' CAGAGTTGTTAGGCCTGGAA
5' GACTCTTGGCCCTGCTCCAT
STS size
229
Amplification Conditions
STS annealing temperature 60-62 oC
Sequence
L43984 ABG377 ABG377-5
Linkage Group
3L 3
Source Species
Hordeum vulgare
Source Germplasm
Shin Ebisu 16
Insert Size
0.7
GrainGenes Marker Report: ABG377
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