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GrainGenes Marker Report: ABG390

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Locus	ABG390
Type	RFLP
Synonym	Synonym ABG390
Chromosome	5H
Chromosome Arm	5HL
Map	[ Hide all but 1 of 21 ] Barley-consensus-2003-5H 79.5 Barley-Consensus-5H 101.8 Barley-Consensus2-5H 174.7 Barley-ConsensusFHB-5H 176 Hordeum-Bins-5H 176.9 Hordeum-Consensus2005-SNP-5H 173.431 Hordeum-Consensus2006-DArT-5H 172.6 Hordeum-Consensus2007-SSR-5H 160.98 Hordeum-Graner2-5H 197.9 Hordeum-GxH-5H 251.31 Hordeum-NABGMP1-5H 181.1 Hordeum-OPA-2009-5H 269.63 Hordeum-PilotOPA1-5H 177.822 Hordeum-QTLConsensus-Abiotic-5H 173.43 Hordeum-QTLConsensus-Agronomic-5H 173.43 Hordeum-StMo-SNP-5H 163.2 Hordeum-SxM-base-5H 180.4 Hordeum-SxM-FeedQTL-5H 181.1 Hordeum-SxM-SSAP-5H 167.9 Hv-Consensus2006-Marcel-5H 160.98 Hv-Integrated2009-5H 157.7
	[ Show Nearby Loci ]
QTL with Locus Marker	QDrm.StMo-5H.2
Map Data	Barley consensus [ Show all 21 ]
Species	Hordeum vulgare
Probe	ABG390
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Close, Timothy J. Langridge, Peter J.
Remark	Number of populations contributing to the placement of ABG390 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L9Oregon Wolfe Barleys x Vada,Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	ABG390-5H Xabg390 Xabg390-3A Xabg390-4A
Probe	ABG390
Locus	ABG390 [ Show all 7 ]
Synonym	Synonym HAR35_10233
External Databases	DDBJ EMBL GenBank
Type	Genomic STS
PCR primers	AACACAACCACAATAAAGAA TTTGAACAGAAGAAAACCTA
STS primers	5' TGTTCCCAGCATTTGAACAG 5' CGGCAATCCTAATTTTTGGA
STS size	357
Amplification Conditions	STS annealing temperature 55-58 oC
Sequence	L43988 ABG390 ABG390-5
Source Species	Hordeum vulgare