GrainGenes Marker Report: ABG391
Locus
ABG391
Type
RFLP STS
Synonym
Synonym ABG391
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-consensus-2003-5H 66.8
[ Show all 32 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QMe.DiMo-5H.3
Map Data
Barley consensus
[ Show all 32 ]
Species
Hordeum vulgare
Probe
ABG391
Reference
[ Hide all but 1 of 8 ] 
Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source
Blake, Tom 05.04.19 Langridge, Peter J.
Remark
Number of populations contributing to the placement of ABG391 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG391-5H Xabg391 Xabg391-5A abg391 abg391-5A
Probe
ABG391
Locus
ABG391
[ Show all 6 ]
Synonym
Synonym HAR35_10560
External Databases
DDBJ EMBL GenBank
Type
Genomic STS
PCR primers
CGGTGAATTCCGTGCATTT
CATCAAACTCAATGCAAGTG
STS primers
5' GCAAGTGCACTGCTGTACAA
5' TGTTCTCGTACCATGACTTC
STS size
ca. 800
Amplification Conditions
STS annealing temperature 52-55 oC
Sequence
L43989 ABG391 ABG391-5 ABG391-3
Source Species
Hordeum vulgare
GrainGenes Marker Report: ABG391
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
| |||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
| ||||||||||||||||||||||||||
|
|