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GrainGenes Marker Report: ABG499

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Locus	ABG499
Type	RFLP STS
Synonym	Synonym ABG499
Chromosome	3H
Chromosome Arm	3HL
Map	[ Hide all but 1 of 23 ] Barley-Consensus-3H 32.1 Barley-Consensus2-3H 76 Barley-ConsensusFHB-3H 92.89 Hordeum-Bins-3H 110.7 Hordeum-Consensus2005-SNP-3H 87.759 Hordeum-Consensus2006-DArT-3H 97.4 Hordeum-Consensus2007-SSR-3H 87.83 Hordeum-KxM-3H 87.3 Hordeum-NABGMP1-3H 121.4 Hordeum-OWB-2004-3H 119.5 Hordeum-OWB-2005-3H 124.1 Hordeum-OWB-3H 125.8 Hordeum-OWB-OPA2008-3H 112.809 Hordeum-OWB-SNP-3H 129.35 Hordeum-QTLConsensus-Abiotic-3H 87.76 Hordeum-QTLConsensus-Agronomic-3H 87.76 Hordeum-StMo-SNP-3H 88.46 Hordeum-SxM-base-3H 97.1 Hordeum-SxM-FeedQTL-3H 121.4 Hordeum-SxM-SSAP-3H 94.5 Hordeum-Zhedar2-FHB-QTL-3H 104.9 Hv-Consensus2006-Marcel-3H 87.83 Hv-Integrated2009-3H 99.1
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.HT_3H_4 QHT.dah-3H
Map Data	Barley consensus [ Show all 23 ]
Species	Hordeum vulgare
Probe	ABG499
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of ABG499 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	ABG499-3H Xabg499-3
Probe	ABG499
Locus	ABG499 Xabg499-3 ABG499-3H
Synonym	Synonym HAR35_18741
Reference	Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Type	Genomic
Sequence	L44036 ABG499
Linkage Group	3
Source Species	Hordeum vulgare
Source Germplasm	Shin Ebisu 16
Insert Size	0.35