Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Amy2

[Submit comment/correction]

Locus	Amy2
Type	Gene RFLP
Synonym	Synonym Amy 2 (Hordeum)
Chromosome	7H
Chromosome Arm	7HL
Map	Barley-Consensus-7H 6.2 [ Show all 19 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QAa.StMo-7H.3 QDp.HaMo-7H.2 QDp.StMo-7H.3 QDrm.StMo-7H
Map Data	Barley consensus [ Show all 19 ]
Species	Hordeum vulgare
Probe	JR050
Associated Gene	Amy 2 (Hordeum) Amy2 (Hordeum)
Candidate Gene	Amy2 (Hordeum)
Gene Class	alpha-Amylase
Reference	[ Hide all but 1 of 6 ] Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Number of populations contributing to the placement of Amy2 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	alpha-Amy-2-7A [ Show all 9 ]
Probe for Locus	JR050
Locus	Amy2
Reference	Khursheed B and Rogers JC (1988) Barley alpha amylase genes quantitative comparison of steady-state messenger RNA levels from individual members of the two different families in aleurone cells Journal of Biological Chemistry 263:18953-18960.
Linkage Group	Barley 1 (7H)
Source Gene Class	alpha-Amylase
Source Species	Hordeum vulgare
Insert Size	1.5