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GrainGenes Marker Report: Amy2 (Hordeum)

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Gene	Amy2 (Hordeum)
Full Name	Alpha-amylase 2
Gene Class	alpha-Amylase
Locus	Amy2
Candidate Locus	Amy2
Reference	Knox CAP et al. (1987) Structure and organization of two divergent alpha amylase genes from barley Plant Molecular Biology 9:3-18.
Gene Product	alpha-amylase
Chromosome	7H
Clone	E gkAmy 155 lambda_amy32b
Sequence	M17127 M17128
Info Source	von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Locus Associated with Gene	Amy2
Type	Gene RFLP
Synonym	Synonym Amy 2 (Hordeum)
Chromosome	7H
Chromosome Arm	7HL
Map	Barley-Consensus-7H 6.2 [ Show all 19 ]
	[ Show Nearby Loci ]
In QTL	QAa.StMo-7H.3 QDp.HaMo-7H.2 QDp.StMo-7H.3 QDrm.StMo-7H
Map Data	[ Hide all but 1 of 19 ] Barley consensus Barley consensus 2 Barley genes 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, OPA 2009, Consensus Barley, Pilot OPA1, Consensus Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs
Species	Hordeum vulgare
Probe	JR050
Associated Gene	Amy 2 (Hordeum) Amy2 (Hordeum)
Candidate Gene	Amy2 (Hordeum)
Gene Class	alpha-Amylase
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. [ Show all 6 ]
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Number of populations contributing to the placement of Amy2 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	alpha-Amy-2-7A [ Show all 9 ]
Locus Candidate for Gene	Amy2
Type	Gene RFLP
Synonym	Synonym Amy 2 (Hordeum)
Chromosome	7H
Chromosome Arm	7HL
Map	Barley-Consensus-7H 6.2 [ Show all 19 ]
	[ Show Nearby Loci ]
In QTL	QAa.StMo-7H.3 QDp.HaMo-7H.2 QDp.StMo-7H.3 QDrm.StMo-7H
Map Data	[ Hide all but 1 of 19 ] Barley consensus Barley consensus 2 Barley genes 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, OPA 2009, Consensus Barley, Pilot OPA1, Consensus Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs
Species	Hordeum vulgare
Probe	JR050
Associated Gene	Amy 2 (Hordeum) Amy2 (Hordeum)
Candidate Gene	Amy2 (Hordeum)
Gene Class	alpha-Amylase
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. [ Show all 6 ]
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Number of populations contributing to the placement of Amy2 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	alpha-Amy-2-7A [ Show all 9 ]

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