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GrainGenes Marker Report: BCD1145

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Locus
BCD1145
Type
RFLP
Synonym
Other namebcd1145
SynonymBCD1145
Chromosome
3H
Map
[ Hide all but 1 of 14 ]
Hordeum-Bins-3H68.2
Hordeum-Consensus2005-SNP-3H53.709
Hordeum-OWB-3H74.6
Hordeum-OWB-SNP-3H79.32
Hordeum-QTLConsensus-Abiotic-3H53.71
Hordeum-QTLConsensus-Agronomic-3H53.71
Hordeum-StMo-SNP-3H54.2
Hv-Consensus2006-Marcel-3H60.58
Hv-Integrated2009-3H71.5
Oat-2001-KxO_1542.5
Oat-2009-KxO_1560
Oat-2016-Consensus-11108.6
Oat-2018-Consensus_Mrg11108.6
Oat-KxO/2003-1544.4
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 14 ]
Species
Avena sativa
Probe
BCD1145
Homology
BAB01986.1e-value: 4e-05(AB018121) vesicle transport v-SNARE (vesicle soluble NSF attachment protein receptor) protein [Arabidopsis thaliana]
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec
Marker placement value = 0.75 cM on map Oat-KxO/2003-15
Marker is not a framework marker on map Oat-KxO/2003-15
Possible Orthologs
Xbcd1145
Xbcd1145-3A
Xbcd1145a
Xbcd1145b
bcd1145


Probe
BCD1145
Locus
Xbcd1145-3A
[ Show all 6 ]
Synonym
SynonymHAR35_16795
HAR35_17320
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Type
cDNA
Sequence
BE438940
BCD1145_WHE04A10.s1
Polymorphism
BCD1145 EcoRI
BCD1145 EcoRV
BCD1145 HindIII
BCD1145 DraI
BCD1145 XbaI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
0.9