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GrainGenes Marker Report: Bmac0040a

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Locus	Bmac0040a
Type	Microsatellite
Chromosome	6H
Map	Barley-ConsensusFHB-6H 108.83 Hordeum-Consensus2007-SSR-6H 113.19 Hv-Consensus2006-Marcel-6H 113.19 Hv-Integrated2009-6H 112.9 Hv-L94/Vada-2006-6H 115.58
	[ Show Nearby Loci ]
Map Data	Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, L94 x Vada, 2006
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmac0040 Bmac40
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	[ Hide all but 1 of 7 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L9Oregon Wolfe Barleys x Vada,Steptoe x Morex,Oregon Wolfe Barleys,Nure x Tremois Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : L94 x Vada, Steptoe x Morex, OWBrecessive x OWBdominant, Lina x H. spontaneum Insert contains repeat (AC)20 Polymorphic Information Content (PIC) = 0.89 Developing laboratory = SCRI (R. Waugh)
Possible Orthologs	Bmac0040 Bmac40 Bmac0040b
Probe for Locus	Bmac0040
Locus	Bmac0040 Bmac0040b Bmac0040a
Synonym	Other name Bmac40
Reference	Hayden MJ et al. (2008) Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping BMC Genomics 9:80. Hearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Type	SSR
PCR primers	AGCCCGATCAGATTTACG TTCTCCCTTTGGTCCTTG Forward AGCCCGATCAGATTTACG Reverse TTCTCCCTTTGGTCCTTG