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GrainGenes Marker Report: Bmac0093

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Locus	Bmac0093
Type	Microsatellite
Synonym	Synonym Bmac93
Chromosome	2H
Map	[ Hide all but 1 of 9 ] Barley, B73xCPI-2H 71.7 Barley-ConsensusFHB-2H 73.03 Hordeum-Consensus2007-SSR-2H 67.01 Hordeum-FxS-FHB-QTL-2H 88.3 Hordeum-LiHs-SNP-2H 63.14 Hordeum-Lx41-2H 116.6 Hordeum-LxHs-2H 50 Hv-Integrated2009-2H 60.1 Hv-Nure/Tremois-2H 77.1
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.DON_2H_17 [ Show all 6 ]
Map Data	Barley, B73xCPI [ Show all 9 ]
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmac0093 Bmac93
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 6 ]
Possible Orthologs	Bmac93
Probe for Locus	Bmac93
Locus	Bmac0093 Bmac93
Synonym	Other name Bmac0093
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AC)24 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.81
Type	PCR SSR
PCR primers	5' CGTTTGGGACGTATCAAT 3' 5' GGGAGTCTTGAGCCTACTG 3'
SSR size	151
Amplification Conditions	1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare