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GrainGenes Marker Report: Bmac0096

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Locus	Bmac0096
Type	Microsatellite
Synonym	Synonym Bmac96
Chromosome	5H
Map	Barley, B73xCPI-5H 51.1 [ Show all 14 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 14 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, B73xCPI Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, Lina x H.spont, SNP Barley, LxHs Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, SNP
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmac0096 Bmac96
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 7 ]
Possible Orthologs	Bmac96
Probe for Locus	Bmac96
Locus	Bmac0096 Bmac96
Synonym	Other name Bmac0096
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AT)6(AC)16 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.74
Type	PCR SSR
PCR primers	5' GCTATGGCGTACTATGTATGGTTG 3' 5' TCACGATGAGGTATGATCAAAGA 3'
SSR size	173
Amplification Conditions	1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare