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GrainGenes Marker Report: Bmac0209

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Locus	Bmac0209
Type	Microsatellite
Synonym	Synonym Bmac209
Chromosome	3H
Map	[ Hide all but 1 of 17 ] Barley, B73xCPI-3H 46.1 Barley-ConsensusFHB-3H 59.59 Hordeum-Consensus2005-SNP-3H 49.78 Hordeum-Consensus2007-SSR-3H 52.39 Hordeum-LiHs-SNP-3H 42.19 Hordeum-LxHs-3H 55 Hordeum-OWB-2004-3H 67.5 Hordeum-OWB-2005-3H 66.2 Hordeum-OWB-3H 67.9 Hordeum-OWB-OPA2008-3H 62.951 Hordeum-OWB-SNP-3H 71.92 Hordeum-QTLConsensus-Abiotic-3H 49.78 Hordeum-QTLConsensus-Agronomic-3H 49.78 Hv-Consensus2006-Marcel-3H 52.39 Hv-Integrated2009-3H 64.1 Hv-L94/Vada-2006-3H 57.68 Hv-Vada/SusPtrit-3H 49.94
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 18 ]
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmac0209 Bmac209
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Locus position not reported in Cebada Capa x SusPtrit map [ Show all 8 ]
Possible Orthologs	Bmac209
Probe for Locus	Bmac209
Locus	Bmac0209 Bmac209
Synonym	Other name Bmac0209
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AC)13 Quality = 1: Single product, only weak stutter bands Diversity Index (DI) = 0.64
Type	PCR SSR
PCR primers	5' CTAGCAACTTCCCAACCGAC 3' 5' ATGCCTGTGTGTGGACCAT 3'
SSR size	176
Amplification Conditions	1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare