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GrainGenes Marker Report: Bmac0209

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Locus	Bmac0209
Type	Microsatellite
Synonym	Synonym Bmac209
Chromosome	3H
Map	Barley, B73xCPI-3H 46.1 [ Show all 17 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 18 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, B73xCPI Barley, Cebada Capa x SusPtrit Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, L94 x Vada, 2006 Barley, Lina x H.spont, SNP Barley, LxHs Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP Barley, Vada x SusPtrit
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmac0209 Bmac209
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Locus position not reported in Cebada Capa x SusPtrit map [ Show all 8 ]
Possible Orthologs	Bmac209
Probe for Locus	Bmac209
Locus	Bmac0209 Bmac209
Synonym	Other name Bmac0209
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AC)13 Quality = 1: Single product, only weak stutter bands Diversity Index (DI) = 0.64
Type	PCR SSR
PCR primers	5' CTAGCAACTTCCCAACCGAC 3' 5' ATGCCTGTGTGTGGACCAT 3'
SSR size	176
Amplification Conditions	1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare