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GrainGenes Marker Report: Bmac0224

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Locus
Bmac0224
Type
Microsatellite
Synonym
SynonymBmac224
Chromosome
7H
Map
[ Hide all but 1 of 11 ]
Barley, B73xCPI-7H87
Barley-ConsensusFHB-7H77.8
Hordeum-Consensus2005-SNP-7H76.746
Hordeum-Consensus2007-SSR-7H80.74
Hordeum-LiHs-SNP-7H103.84
Hordeum-LxHs-7H93
Hordeum-QTLConsensus-Abiotic-7H76.75
Hordeum-QTLConsensus-Agronomic-7H76.75
Hv-Consensus2006-Marcel-7H80.74
Hv-Integrated2009-7H84.5
Hv-L94/Vada-2006-7H80.5
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 11 ]
Species
Hordeum spontaneum
Hordeum vulgare
Probe
Bmac0224
Bmac224
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 7 ]
Possible Orthologs
Bmac224


Probe for Locus
Bmac224
Locus
Bmac0224
Bmac224
Synonym
Other nameBmac0224
Reference
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks
Insert contains repeat (AC)5/(AC)5
Quality = 2: Single product, relatively strong stutter bands
Diversity Index (DI) = 0.2
Type
PCR
SSR
PCR primers
5' GCATATATACCACCCTTGGT 3'
5' ATTCTTGATGGCTATAGCTTG 3'
SSR size
166
Amplification Conditions
1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare