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GrainGenes Marker Report: Bmac0316

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Locus	Bmac0316
Type	Microsatellite
Synonym	Synonym Bmac316
Chromosome	6 (6H) 6H
Map	[ Hide all but 1 of 20 ] Barley, B73xCPI-6H 8.2 Barley-ConsensusFHB-6H 10.83 Hordeum-Consensus2005-SNP-6H 9.523 Hordeum-Consensus2007-SSR-6H 7.16 Hordeum-LiHs-SNP-6H 94.2 Hordeum-LxHs-6H 6 Hordeum-OWB-2004-6H 4.2 Hordeum-OWB-2005-6H 4.2 Hordeum-OWB-6H 0 Hordeum-OWB-OPA2008-6H 2.198 Hordeum-OWB-SNP-6H 4.04 Hordeum-QTLConsensus-Abiotic-6H 9.52 Hordeum-QTLConsensus-Agronomic-6H 9.52 Hordeum-TxE-6H 6.4 Hv-CebadaCapa/SusPtrit-6H 0 Hv-Consensus2006-Marcel-6H 7.16 Hv-Integrated2009-6H 4.6 Hv-L94/Vada-2006-6H 1.53 Hv-Nure/Tremois-6H 0 Hv-Vada/SusPtrit-6H 6.23
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 20 ]
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmac0316 Bmac316
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 7 ]
Possible Orthologs	Bmac316
Probe for Locus	Bmac316
Locus	Bmac0316 Bmac316
Synonym	Other name Bmac0316
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AC)19 Quality = 1: Single product, only weak stutter bands Diversity Index (DI) = 0.69
Type	PCR SSR
PCR primers	5' ATGGTAGAGGTCCCAACTG 3' 5' ATCACTGCTGTGCCTAGC 3'
SSR size	135
Amplification Conditions	1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare