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GrainGenes Marker Report: Bmag0005

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Locus	Bmag0005
Type	Microsatellite
Synonym	Synonym Bmag5
Chromosome	5H
Map	[ Hide all but 1 of 9 ] Barley, B73xCPI-1H 50.9 Barley-ConsensusFHB-5H 61.29 Hordeum-Consensus2005-SNP-5H 56.22 Hordeum-Consensus2007-SSR-5H 53.12 Hordeum-CxB-5H 17.5 Hordeum-LiHs-SNP-5H 41.96 Hordeum-LxHs-5H 41 Hordeum-QTLConsensus-Abiotic-5H 56.22 Hordeum-QTLConsensus-Agronomic-5H 56.22
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 9 ]
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmag0005 Bmag5
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Lina x H. spontaneum Insert contains repeat (AG)15 Polymorphic Information Content (PIC) = 0.45 Developing laboratory = SCRI (R. Waugh)
Possible Orthologs	Bmag5a Bmag5b
Probe for Locus	Bmag5
Locus	Bmag0005 Bmag5a Bmag5b
Synonym	Other name Bmag0005
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AG)15 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.45
Type	PCR SSR
PCR primers	5' TCCATGATGATGTGTGCATAGA 3' 5' CGGATCCCAACAAACACAC 3'
SSR size	173
Amplification Conditions	1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare