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GrainGenes Marker Report: Bmag0006

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Locus	Bmag0006
Type	Microsatellite
Synonym	Synonym Bmag6
Chromosome	3H
Map	Barley, B73xCPI-3H 46.1 [ Show all 6 ]
	[ Show Nearby Loci ]
Map Data	Barley, B73xCPI [ Show all 6 ]
Species	Hordeum vulgare
Probe	Bmag0006 Bmag006 Bmag6
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	[ Hide all but 1 of 6 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Igri x Franka Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Igri x Franka, Lina x H. spontaneum Insert contains repeat (AG)17 Polymorphic Information Content (PIC) = 0.64 Developing laboratory = SCRI (R. Waugh)
Possible Orthologs	Bmag006 Bmag6
Probe for Locus	Bmag006
Locus	Bmag0006
Synonym	Other name Bmag0006 Bmag6
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Type	SSR
PCR primers	TTAAACCCCCCCCCTCTAG TGCAGTTACTATCGCTGATTTAGC