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GrainGenes Marker Report: Bmag0131

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Locus
Bmag0131
Type
Microsatellite
Synonym
SynonymBmag131
Chromosome
3H
Map
[ Hide all but 1 of 11 ]
Barley, B73xCPI-3H43.4
Barley-ConsensusFHB-3H56.97
Hordeum-Consensus2005-SNP-3H49.568
Hordeum-Consensus2007-SSR-3H51.06
Hordeum-LiHs-SNP-3H41.89
Hordeum-Lx41-3H43.5
Hordeum-LxHs-3H55
Hordeum-Pillen-3H56
Hordeum-QTLConsensus-Abiotic-3H49.57
Hordeum-QTLConsensus-Agronomic-3H49.57
Hv-Integrated2009-3H61.7
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Map Data
Barley, Abiotic QTL Consensus
[ Show all 11 ]
Species
Hordeum vulgare
Probe
Bmag0131
Bmag131
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 6 ]
Probe for Locus
Bmag131
Locus
Bmag0131
Bmag131
Synonym
Other nameBmag0131
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks
Insert contains repeat (AG)16G(AG)15
Quality = 1: Single product, only weak stutter bands
Diversity Index (DI) = 0.87
Type
PCR
SSR
PCR primers
5' TTTCAGAAACGGAGTTTTG 3'
5' CCTCCACACAAAAAATCC 3'
TTTCAGAAACGGAGTTTTG
CCTCCACACAAAAAATCC
SSR size
149
Amplification Conditions
1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare