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GrainGenes Marker Report: Bmag0344a

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Locus	Bmag0344a
Type	Microsatellite
Synonym	Synonym Bmag344
Chromosome	6H
Map	Barley-ConsensusFHB-6H 65.28 [ Show all 8 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 8 ]
Species	Hordeum vulgare
Probe	Bmag0344 Bmag344
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	[ Hide all but 1 of 6 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Igri x Franka Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Igri x Franka, Lina x H. spontaneum Insert contains repeat (CT)10GT(CT)16 Polymorphic Information Content (PIC) = 0.79 Developing laboratory = SCRI (R. Waugh)
Possible Orthologs	Bmag344 Bmag0344b Bmag0344c
Probe for Locus	Bmag0344
Locus	Bmag0344c Bmag0344b Bmag0344a
Synonym	Other name Bmag344
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Type	SSR
PCR primers	GATCCAACTATATTAACAAAGCC TGAGGGTATGTACCACTAGCT