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GrainGenes Marker Report: Bmy1 (Hordeum)

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Gene	Bmy1 (Hordeum)
Full Name	Beta-amylase 1
Gene Class	beta-Amylase
Locus	Bmy1 BMYI BMYI(isozyme)
Candidate Locus	Bmy1
Reference	Clark SE et al. (2003) Effects of single nucleotide polymorphisms in beta-amylase 1 alleles from barley on functional properties of the enzymes Plant Physiology and Biochemistry 41:798-804. Erkkila MJ and Ahokas H (2001) Special barley beta-amylase allele in a Finnish landrace line HA52 with high grain enzyme activity Hereditas 134:91-95. Erkkila MJ et al. Allele-Dependent Barley Grain Beta-Amylase Activity Plant Physiology 117:679-685.
Gene Product	beta-amylase
Chromosome	4H
Chromosome Arm	4HL
Clone	pc_beta_C51
Sequence	AB048949 AF061203 AF414081 AF414082 AJ301645
Data Source	Karakousis, Angelo 96.10
Info Source	von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Locus Associated with Gene	Bmy1
Type	Gene RFLP
Synonym	Synonym Bmy1 (Hordeum)
Chromosome	4H
Chromosome Arm	4HL
Map	Barley-consensus-2003-4H 103.3 [ Show all 29 ]
	[ Show Nearby Loci ]
In QTL	QBa-GaHN-4H QDP.ChHa-4H QDp.DiMo-4H QHd.StMo-4H.2 QSr.CaBo-4H
Map Data	Barley consensus [ Show all 29 ]
Species	Hordeum vulgare
Probe	pcb51 pcbC51
Associated Gene	Bmy1 (Hordeum)
Candidate Gene	Bmy1 (Hordeum)
Gene Class	beta-Amylase
Reference	[ Hide all but 1 of 8 ] Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027. Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354. Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source	Blake, Tom 05.04.19 Close, Timothy J. Langridge, Peter J.
Remark	Number of populations contributing to the placement of Bmy1 in the Barley, Consensus 2006 DArT maps = 3 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Nure x Tremois Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Locus Associated with Gene	BMYI
Type	RFLP
Map	Hordeum-CxH-4H 138.16 Hordeum-GxH-4H 157.58
	[ Show Nearby Loci ]
Map Data	Barley, CxH  Mapped_with_probe  BMYI Barley, GxH  Mapped_with_probe  BMYI
Probe	BMYI
Associated Gene	Bmy1 (Hordeum)
Gene Class	beta-Amylase
Locus Associated with Gene	BMYI(isozyme)
Type	Gene
Map	Hordeum-CxH-4H 138.16
	[ Show Nearby Loci ]
Map Data	Barley, CxH  Mapped_by_function  Bmy1 (Hordeum)
Associated Gene	Bmy1 (Hordeum)
Gene Class	beta-Amylase
Locus Candidate for Gene	Bmy1
Type	Gene RFLP
Synonym	Synonym Bmy1 (Hordeum)
Chromosome	4H
Chromosome Arm	4HL
Map	Barley-consensus-2003-4H 103.3 [ Show all 29 ]
	[ Show Nearby Loci ]
In QTL	QBa-GaHN-4H QDP.ChHa-4H QDp.DiMo-4H QHd.StMo-4H.2 QSr.CaBo-4H
Map Data	Barley consensus [ Show all 29 ]
Species	Hordeum vulgare
Probe	pcb51 pcbC51
Associated Gene	Bmy1 (Hordeum)
Candidate Gene	Bmy1 (Hordeum)
Gene Class	beta-Amylase
Reference	[ Hide all but 1 of 8 ] Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027. Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354. Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source	Blake, Tom 05.04.19 Close, Timothy J. Langridge, Peter J.
Remark	Number of populations contributing to the placement of Bmy1 in the Barley, Consensus 2006 DArT maps = 3 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Nure x Tremois Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Locus	Bmy1 (Hordeum)
Synonym	Synonym Bmy1

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