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GrainGenes Marker Report: CDO036

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Locus	CDO036
Type	RFLP
Synonym	Synonym gpa (Hordeum)
Chromosome	2H
Map	Barley-ConsensusFHB-2H 151.2 [ Show all 8 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 8 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009
Species	Hordeum vulgare
Probe	CDO36
Associated Gene	gpa (Hordeum)
Gene Class	Grandpa
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Kleinhofs A (1997) Integrating Barley RFLP and Classical Marker Maps: Barley Genetics Newsletter 27:105.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	CDO36 [ Show all 22 ]
Probe for Locus	CDO36
Locus	CDO36b [ Show all 23 ]
Synonym	Synonym HAR35_21104 HAR35_6860
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA STS
PCR primers	TCAAGCGAACCATCAGCGT AGCCCTCGCCTAGCTCAG
Sequence	AA231751 AA231907 CDO36-5
Polymorphism	CDO36 EcoRI
Linkage Group	[b 1S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.1
PCR size	1.1