GrainGenes Marker Report: CDO1396
Locus
CDO1396
Type
RFLP
Synonym
Other name cdo1396
Chromosome
1A 1B 1D 1H
Chromosome Arm
1AL 1BL 1DL
Map
1D.1R recombinants -39.3
[ Show all 14 ]
[ Show Nearby Loci ]
Rearrangement
In segment RL-1 Not in segment 82-180 WR-4 WR-5 R1
Map Data
Barley consensus 2003
[ Show all 13 ]
Species
Avena sativa Avena sativa L.
Probe
CDO1396
Homology
RS1A_ARATH e-value: 1e-11 40S RIBOSOMAL PROTEIN S15A thaliana] Arabidopsis thaliana gb|L27461. EST gb|R30315 comes from this gene. thaliana] RS1A_ARATH e-value: 1e-68 40S RIBOSOMAL PROTEIN S15A thaliana] Arabidopsis thaliana gb|L27461. EST gb|R30315 comes from this gene. thaliana]
Data Source
Langridge, Peter J.
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-5 Marker is a framework marker on map Oat-KxO/2003-5
Possible Orthologs
CDO1396A CDO1396B Xcdo1396 Xcdo1396sc cdo1396
Probe
CDO1396
Locus
[ Hide all but 1 of 6 ] CDO1396 Xcdo1396 CDO1396B Xcdo1396sc CDO1396A cdo1396
Synonym
Synonym HAR35_15083 HAR35_15084
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439156 BE439225 CDO1396_WHE03D06.s1 CDO1396_WHE03D06.r1
Polymorphism
CDO1396 DraI
Linkage Group
1L, 3L
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
0.8
PCR size
0.8
GrainGenes Marker Report: CDO1396
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