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GrainGenes Marker Report: CDO20

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Locus	cdo20
Type	RFLP
Chromosome	4H
Map	Hordeum-Consensus2006-DArT-4H 117.1 [ Show all 12 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QPRO.OxM-QTL4_8
Map Data	[ Hide all but 1 of 11 ] Barley, Consensus 2006, DArT Oat, KxO, 2003 Oat, MxN, genetic 2005 Oat, OxT Oat-2003-OglexMAM17-5 Oat-2004-OxM-QTL4 Oat-2010-MxN_PcQTL Oat-2013-MxN-RGA Oat-2013-SxW-RGA Rice, BxOl Wheat, Yr genes and QTL
Probe	CDO20
Homology	AC051633_5 e-value: 1e-25 (AC051633) putative ubiquitin protein [Oryza sativa] AC051633_5 e-value: 4e-14 (AC051633) putative ubiquitin protein [Oryza sativa]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark	Number of populations contributing to the placement of CDO20 in the Barley, Consensus 2006 DArT maps = 1 Marker placement value = 15.60 cM on map Oat-KxO/2003-5 Marker is not a framework marker on map Oat-KxO/2003-5
Possible Orthologs	CDO020 [ Show all 11 ]
Probe	CDO20
Locus	Xcdo20-5A [ Show all 12 ]
Synonym	Synonym HAR35_17893 HAR35_1872
Related Probe	CDO394 CDO1528
	Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library
Type	cDNA
Sequence	BE439040 [ Show all 6 ]
Polymorphism	CDO20 DraI CDO20 EcoRV CDO20 EcoRI CDO20 HindIII CDO20 XbaI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
PCR size	1.2