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GrainGenes Marker Report: CDO400

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Locus	cdo400
Type	RFLP
Synonym	Synonym cdo400
Chromosome	1A 1H 5H 7 (5H)
Chromosome Arm	1AL
Map	Hordeum-Bins-1H 152.7 [ Show all 21 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QGwe.TaER-5H.2
Map Data	Barley, Abiotic QTL Consensus [ Show all 22 ]
Probe	CDO400
Homology	BAB05976.1 e-value: 1.1 (AP001514) BH2257~unknown conserved protein in B. subtilis [Bacillus halodurans] NP_113448.1 e-value: 7e-04 ubiquitin-conjugating enzyme E2-21 KD [Guillardia theta]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark	Number of populations contributing to the placement of CDO400 in the Barley, Consensus 2006 DArT maps = 1 Marker placement value = 0.00 cM on map Oat-KxO/2003-14 Marker is a framework marker on map Oat-KxO/2003-14
Possible Orthologs	[ Hide all but 1 of 8 ] CDO400a CDO400b Xcdo400 Xcdo400-5A Xcdo400-5B Xcdo400-5D CDO400 cdo400y
Probe	CDO400
Locus	CDO400b [ Show all 12 ]
Synonym	Synonym HAR35_19904
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439060 [ Show all 6 ]
Polymorphism	CDO400 DraI
Linkage Group	1L, 5L
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	0.8
PCR size	0.8