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GrainGenes Marker Report: CDO400

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Locus	cdo400
Type	RFLP
Synonym	Synonym cdo400
Chromosome	1A 1H 5H 7 (5H)
Chromosome Arm	1AL
Map	Hordeum-Bins-1H 152.7 [ Show all 21 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QGwe.TaER-5H.2
Map Data	Barley, Abiotic QTL Consensus [ Show all 22 ]
Probe	CDO400
Homology	BAB05976.1 e-value: 1.1 (AP001514) BH2257~unknown conserved protein in B. subtilis [Bacillus halodurans] NP_113448.1 e-value: 7e-04 ubiquitin-conjugating enzyme E2-21 KD [Guillardia theta]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark	Number of populations contributing to the placement of CDO400 in the Barley, Consensus 2006 DArT maps = 1 Marker placement value = 0.00 cM on map Oat-KxO/2003-14 Marker is a framework marker on map Oat-KxO/2003-14
Possible Orthologs	CDO400a [ Show all 8 ]
Probe	CDO400
Locus	CDO400b [ Show all 12 ]
Synonym	Synonym HAR35_19904
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	[ Hide all but 1 of 6 ] BE439060 BE439111 CDO400_WHE2F0062 CDO400_WHE2F0061 AA231758 AA231759
Polymorphism	CDO400 DraI
Linkage Group	1L, 5L
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	0.8
PCR size	0.8