Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: CDO405

[Submit comment/correction]

Locus	CDO405
Type	RFLP
Synonym	Other name cdo405
Chromosome	2A 2B 2D
Chromosome Arm	2BS 2DS
Map	Oat-2001-KxO_8 8.75 [ Show all 7 ]
	[ Show Nearby Loci ]
Map Data	Maize, TxCM [ Show all 8 ]
Species	Avena sativa
Probe	CDO405
Homology	CAB81517.1 e-value: 7e-10 (AL161588) ATM-like protein [Arabidopsis thaliana]
Remark	Marker placement value = 28.90 cM on map Oat-KxO/2003-8 Marker is not a framework marker on map Oat-KxO/2003-8
Possible Orthologs	cdo405a [ Show all 16 ]
Probe	CDO405
Locus	CDO405 [ Show all 18 ]
Synonym	Synonym HAR35_3670
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	[ Hide all but 1 of 6 ] BE439061 BE439112 CDO405_WHE2F0071 CDO405_WHE2F0072 AA231912 AA231760
Polymorphism	CDO405 EcoRI Durums CDO405 EcoRI CDO405 EcoRV
Linkage Group	2S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.8
PCR size	1.8