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GrainGenes Marker Report: CDO475

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Locus	CDO475
Type	RFLP
Synonym	Synonym CDO475
Chromosome	1 (7H) 7A 7D 7H
Chromosome Arm	7AS 7HS
Map	Barley-Consensus-7H -45.8 [ Show all 18 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.FHB_7H_4 MetaQ.HD_7H_2
Map Data	Barley consensus [ Show all 20 ]
Species	Hordeum vulgare
Probe	CDO475
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec
Possible Orthologs	[ Hide all but 1 of 12 ] CDO475B CDO475c Xcdo475 Xcdo475-4A Xcdo475-7A Xcdo475.1 Xcdo475a Xcdo475B Xcnl.CDO475 cdo475 cdo475-7D cdo475-7A
Probe	CDO475
Locus	CDO475 [ Show all 13 ]
External Databases	DDBJ EMBL GenBank
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA STS
PCR primers	GAC ACA TTG ACC GCA TCT TA CCT TCA CCT CGC TCC CTA CC
Sequence	AA231764 AA231884 CDO475
Polymorphism	CDO475 EcoRI CDO475 EcoRV
Linkage Group	7S [b 1S] 7S [b 1S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.8
PCR size	1.8