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GrainGenes Marker Report: CDO497

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Locus	CDO497
Type	RFLP
Synonym	Other name cdo497 Synonym CDO497 POPA2_1216
Chromosome	6 (6H) 6A 6B 6D 6H
Chromosome Arm	6AL 6BL 6DL 6HS
Map	[ Hide all but 1 of 16 ] Barley-Consensus-6H -4.5 Barley-Consensus2-6H 60.7 Hordeum-Bins-6H 68.1 Hordeum-Consensus2005-SNP-6H 70.819 Hordeum-Consensus2006-DArT-6H 68.2 Hordeum-QTLConsensus-Abiotic-6H 70.82 Hordeum-QTLConsensus-Agronomic-6H 70.82 Hordeum-StMo-SNP-6H 61.9 Hordeum-SxM-base-6H 67.5 Hordeum-SxM-SSAP-6H 64.6 Hordeum-TxE-6H 109.4 Hv-Consensus2006-Marcel-6H 61.36 Hv-Integrated2009-6H 63.2 Oat-2016-Consensus-17 14.7 Oat-2018-Consensus_Mrg17 14.7 Rice-CU-7 50.8
	[ Show Nearby Loci ]
QTL with Locus Marker	QHt.TaER-6H.2 QLg.TaER-6H.2 QMat.TaER-6H QYld.TaER-6H.2
Map Data	Barley consensus [ Show all 20 ]
Species	Avena sativa
Probe	CDO497
Homology	AC079038_6 e-value: 4e-19 (AC079038) Unknown protein [Oryza sativa]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark	Number of populations contributing to the placement of CDO497 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	Xcdo497 Xcdo497-6A Xcdo497-6B cdo497x
Probe	CDO497
Locus	CDO497 Xcdo497-6A Xcdo497-6B Xcdo497 cdo497x
Synonym	Synonym HAR35_4048
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	BE439073 [ Show all 8 ]
Polymorphism	CDO497 EcoRI
Linkage Group	6L
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3