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GrainGenes Marker Report: CDO541

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Locus	CDO541
Type	RFLP
Chromosome	4 (4H) 4A 4B 4D 4H
Chromosome Arm	4AS 4BL 4DL 4HL
Map	Barley-Consensus-4H 9.7 [ Show all 8 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 9 ] Barley consensus Barley consensus 2 Barley, BinMap 2005 Barley, Consensus 2006, DArT Barley, CxS Barley, TxE Oat, KxO, 2003 Oat-2009-KxO Wheat chromosome arm map
Probe	CDO541
Homology	NP_085578.1 e-value: 5.4 orf205 [Arabidopsis thaliana]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source	Kleinhofs, Andris
Remark	Number of populations contributing to the placement of CDO541 in the Barley, Consensus 2006 DArT maps = 1 This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin Marker placement value = 0.00 cM on map Oat-KxO/2003-21+46_31+40 Marker is a framework marker on map Oat-KxO/2003-21+46_31+40
Possible Orthologs	Xcdo541 Xcnl.CDO541
Probe	CDO541
Locus	CDO541 Xcdo541 Xcnl.CDO541
Synonym	Synonym HAR35_18511
External Databases	DDBJ EMBL GenBank
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA STS
PCR primers	ACA GAA ATG ACT CAC ACA GG AGA AAC ATA ACC GCA ACA TC
Sequence	BE439139 CDO541_WHE2H0111 CDO541_WHE2H0112 CDO541
Polymorphism	CDO541 EcoRI
Linkage Group	4L [b 4L]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.5
PCR size	1.5