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GrainGenes Marker Report: CDO542

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Locus	CDO542
Type	RFLP
Synonym	Synonym CDO542
Chromosome	4A 4B 4D 4H
Chromosome Arm	4DS
Map	[ Hide all but 1 of 21 ] Barley-ConsensusFHB-1H 146 Barley-ConsensusFHB-4H 35.4 Hordeum-Bins-4H 21 Hordeum-Consensus2005-SNP-4H 28.364 Hordeum-OWB-2004-4H 28.7 Hordeum-OWB-2005-4H 29.6 Hordeum-OWB-4H 31.2 Hordeum-OWB-OPA2008-4H 32.463 Hordeum-OWB-SNP-4H 31.38 Hordeum-QTLConsensus-Abiotic-4H 28.36 Hordeum-QTLConsensus-Agronomic-4H 28.36 Hv-Consensus2006-Marcel-4H 31.76 Hv-Integrated2009-4H 42.2 Oat-2001-KxO_22 53.75 Oat-2002-KxO-Pal_22 97.46 Oat-2009-KxO_22_44_18 114 Oat-2016-Consensus-20 111.4 Oat-2016-KxO_1 155 Oat-2018-Consensus_Mrg20 111.4 Oat-KxO/2003-22_44+18 120 Rice-CU-3 102.2
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.FHB_4H_1 MetaQ.FHB_4H_2 MetaQ.HT_4H_2 MetaQ.KPS_4H_1
Map Data	Barley, Abiotic QTL Consensus [ Show all 21 ]
Species	Avena sativa Hordeum vulgare
Probe	CDO542
Homology	AC087181_5 e-value: 3e-24 (AC087181) putative CCAAT displacement protein [Oryza sativa] AC087181_5 e-value: 1e-43 (AC087181) putative CCAAT displacement protein [Oryza sativa]
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Kleinhofs, Andris
Remark	This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin [ Show all 6 ]
Possible Orthologs	CDO542-4H Xcdo542
Probe	CDO542
Locus	Xcdo542 CDO542 CDO542-4H
Synonym	Synonym HAR35_22993 HAR35_34915
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439077 BE439143 CDO542_WHE2H0121 CDO542_WHE2H0122
Polymorphism	CDO542 EcoRI
Linkage Group	4S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.2
PCR size	1.2