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GrainGenes Marker Report: CDO542

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Locus	CDO542
Type	RFLP
Synonym	Synonym CDO542
Chromosome	4A 4B 4D 4H
Chromosome Arm	4DS
Map	Barley-ConsensusFHB-1H 146 [ Show all 21 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.FHB_4H_1 MetaQ.FHB_4H_2 MetaQ.HT_4H_2 MetaQ.KPS_4H_1
Map Data	[ Hide all but 1 of 21 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP Oat, KxO, 2003 Oat-2001-KxO Oat-2002-KxO_Pal Oat-2009-KxO Oat-2016-Consensus Oat-2016-KxO Oat-2018-Consensus Rice, BxOl Wheat chromosome arm map
Species	Avena sativa Hordeum vulgare
Probe	CDO542
Homology	AC087181_5 e-value: 3e-24 (AC087181) putative CCAAT displacement protein [Oryza sativa] AC087181_5 e-value: 1e-43 (AC087181) putative CCAAT displacement protein [Oryza sativa]
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Kleinhofs, Andris
Remark	This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin [ Show all 6 ]
Possible Orthologs	CDO542-4H Xcdo542
Probe	CDO542
Locus	Xcdo542 CDO542 CDO542-4H
Synonym	Synonym HAR35_22993 HAR35_34915
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439077 BE439143 CDO542_WHE2H0121 CDO542_WHE2H0122
Polymorphism	CDO542 EcoRI
Linkage Group	4S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.2
PCR size	1.2