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GrainGenes Marker Report: CDO580

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Locus	CDO580
Type	RFLP
Synonym	Other name cdo580
Chromosome	1A 1B 1D 1H
Chromosome Arm	1AS 1BS 1DS 1HL
Map	[ Hide all but 1 of 13 ] 1D.1R recombinants 25.5 Barley-Consensus-1H 5.8 Barley-ConsensusFHB-1H 56.6 Hordeum-CxH-1H 58.96 Hordeum-FxS-FHB-QTL-1H 41 Oat-2001-KxO_4-12 40 Oat-2009-KxO_4_12_13 156 Oat-2016-Consensus-15 81.4 Oat-2016-OxT_6a 0 Oat-2018-Consensus_Mrg15 81.4 Oat-KxO/2003-4_12 34.5 Oat-OxT-11 0 Rice-CU-5 15.6
	[ Show Nearby Loci ]
Rearrangement	In segment 82-180 [ Show all 6 ]
Map Data	Barley consensus [ Show all 14 ]
Species	Avena sativa
Probe	CDO580
Homology	T47470 e-value: 1e-33 isovaleryl-CoA-dehydrogenase precursor (IVD) - Arabidopsis thaliana [Arabidopsis thaliana]
Reference	Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
Remark	Marker placement value = 0.00 cM on map Oat-KxO/2003-4_12 Marker is a framework marker on map Oat-KxO/2003-4_12
Possible Orthologs	CDO580(A) [ Show all 13 ]
Probe	CDO580
Locus	CDO580 [ Show all 19 ]
Synonym	Synonym HAR35_15747 HAR35_15748 HAR35_38596
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439190 [ Show all 6 ]
Polymorphism	CDO580 EcoRV CDO580 XbaI
Linkage Group	1S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3