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GrainGenes Marker Report: CDO588

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Locus	CDO588
Type	RFLP
Synonym	Synonym CDO588
Chromosome	2H
Chromosome Arm	2HL
Map	Barley-consensus-2003-2H 74.7 [ Show all 18 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 18 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, CxH Barley, CxS Barley, Dicktoo x Morex Barley, Integrated, Marcel 2009 Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs
Probe	CDO588
Homology	AGL6_ARATH e-value: 3.4 AGAMOUS-LIKE MADS BOX PROTEIN AGL6 DCAM_HORCH e-value: 1e-25 S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME (ADOMETDC) (SAMDC) barley Triticum durum]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO588 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	XCDO588 Xcdo588-2A Xcdo588-2B Xcdo588-2D Xcnl.CDO588
Probe	CDO588
Locus	CDO588 [ Show all 7 ]
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439145 BE439213 CDO588_WHE03A06.r1 CDO588_WHE03A06.s1 CDO588
Linkage Group	[b 2L] 2
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.6
PCR size	1.6