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GrainGenes Marker Report: CDO669

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Locus
CDO669
Type
RFLP
Synonym
SynonymCDO669a
CDO669B
Chromosome
4 (4H)
4A
4B
4D
4H
Chromosome Arm
4AS
4DS
4HS
Map
[ Hide all but 1 of 11 ]
Barley-Consensus-4H-40.5
Barley-Consensus2-4H18.1
Hordeum-Consensus2006-DArT-4H28.1
Hordeum-CxS-4H120.77
Hordeum-HxT-base-4H25.9
Hordeum-NABGMP1-4H17.2
Hordeum-NABGMP2-4H19.4
Hordeum-SxM-base-4H17.1
Hordeum-SxM-FeedQTL-4H17.2
Hordeum-SxM-SSAP-4H17.2
Hordeum-TxE-4H2.5
[ Show Nearby Loci ]
QTL with Locus Marker
QAa.StMo-4H.1
QDp.StMo-4H
QMe.StMo-4H
QPg.PrNu-4H
Map Data
Barley consensus
[ Show all 12 ]
Probe
CDO669
Homology
AF361799_1e-value: 1e-22(AF361799) At1g27150/T7N9_21 [Arabidopsis thaliana]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of CDO669 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs
CDO669a
[ Show all 14 ]
Probe
CDO669
Locus
CDO669C
[ Show all 15 ]
Synonym
SynonymHAR35_5138
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
OatUni-ZAPXR
Type
cDNA
Sequence
BE439240
CDO669_WHE03A11.r1
CDO669_WHE03A11.s1
Polymorphism
CDO669 EcoRI
Durums CDO669 EcoRI
CDO669 EcoRV
CDO669 DraI
Linkage Group
4S [b 4S]
4S [b 4S]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.3
PCR size
1.3