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GrainGenes Marker Report: CDO669B

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Locus	CDO669B
Type	RFLP
Synonym	Synonym CDO669
Chromosome	1H 5H
Map	Barley-Consensus2-5H 45.1 [ Show all 16 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus 2 [ Show all 16 ]
Species	Avena sativa
Probe	CDO669
Homology	AF361799_1 e-value: 1e-22 (AF361799) At1g27150/T7N9_21 [Arabidopsis thaliana]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	[ Hide all but 1 of 6 ] Number of populations contributing to the placement of CDO669b in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Marker placement value = 6.03 cM on map Oat-KxO/2003-22_44+18 Marker is not a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs	CDO669 [ Show all 14 ]
Probe for Locus	CDO669
Locus	CDO669C [ Show all 15 ]
Synonym	Synonym HAR35_5138
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	BE439240 CDO669_WHE03A11.r1 CDO669_WHE03A11.s1
Polymorphism	CDO669 EcoRI Durums CDO669 EcoRI CDO669 EcoRV CDO669 DraI
Linkage Group	4S [b 4S] 4S [b 4S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3