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GrainGenes Marker Report: CDO673

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Locus	CDO673
Type	RFLP
Synonym	Synonym nud (Hordeum)
Chromosome	1H 7H
Chromosome Arm	7HS
Map	Barley-consensus-2003-1H 117.8 [ Show all 17 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QPg.PrNu-5H.1
Map Data	Barley consensus [ Show all 16 ]
Probe	CDO673
Associated Gene	nud (Hordeum)
Homology	AC012188_16 e-value: 2e-23 (AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats. D81906 e-value: 2.1 probable GTP-binding protein NMA1370 [imported] - Neisseria meningitidis (group A strain Z2491) Z2491] AC012188_16 e-value: 2e-21 (AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
Gene Class	Naked karyopsis
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO673 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	[ Hide all but 1 of 8 ] cdo673a cdo673b Xcdo673 Xcdo673A Xcdo673B Xcnl.CDO673 CDO673B CDO673A
Gene Associated with Locus	nud (Hordeum)
Full Name	Naked caryopsis
Synonym	Synonym n (Hordeum) von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Gene Class	Naked karyopsis
Allele	Nud (Hordeum) nud (Hordeum)
Locus	CDO673 mn nud
Chromosome	7H
Image	Barley, Nud (hulled) phenotype Barley, nud (naked) phenotype
Data Source	Franckowiak, Jerome D. 96.10
Probe	CDO673
Locus	CDO673 [ Show all 9 ]
Synonym	Synonym HAR35_5301
External Databases	DDBJ EMBL GenBank
Reference	Wight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361. Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA STS
PCR primers	GCC ATT GGT ATT GCG AGA GG ACG AGC GTC AGT CGG TCA CT
Sequence	BE439193 [ Show all 8 ]
Linkage Group	1LS
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.1
PCR size	1.1