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GrainGenes Marker Report: CDO99

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Locus	CDO99
Type	RFLP
Synonym	Synonym CDO099
Chromosome	1A 1H 5 (1H)
Chromosome Arm	1AS 1HS
Map	Barley-Consensus-1H -9.5 [ Show all 16 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QKp.HaMo-1H.1 QKp.nab-1H.1 QMe.HaMo-1H.1 QMe.nab-1H.1
Map Data	Barley consensus [ Show all 17 ]
Species	Avena sativa Avena sativa L.
Probe	CDO99
Homology	BAB01753.1 e-value: 0.46 (AP000603) gb|AAD10646.1~gene_id:MRP15.12~strong similarity to unknown protein [Arabidopsis thaliana]
Reference	Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Marker placement value = 3.85 cM on map Oat-KxO/2003-17 Marker is not a framework marker on map Oat-KxO/2003-17
Possible Orthologs	[ Hide all but 1 of 11 ] CDO099 CDO0099a CDO99B CDO99C Xcdo99 Xcdo99-1 Xcdo99-1A Xcdo99-1B Xcdo99-1D Xcdo99e Xcnl.CDO99
Probe	CDO99
Locus	CDO99 [ Show all 12 ]
Synonym	Synonym HAR35_2446 HAR35_47059
Related Probe	BCD98
	Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439326 [ Show all 7 ]
Polymorphism	CDO99 DraI CDO99 EcoRI CDO99 EcoRV
Linkage Group	1S,7S [b 5H]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	2.1
PCR size	2.1