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GrainGenes Marker Report: GBM1123

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Locus	GBM1123
Type	Microsatellite
Chromosome	3H
Map	Barley, B73xCPI-3H 5.6 Barley-ConsensusFHB-3H 55.88 Hordeum-Consensus2007-SSR-3H 53.24 Hv-Integrated2009-3H 67.9
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Map Data	Barley, B73xCPI Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009
Species	Hordeum vulgare
Probe	GBM1123
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Varshney RK et al. (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome Theoretical and Applied Genetics 113:239-250.
Remark	[ Hide all but 1 of 6 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (AC)8 Polymorphic Information Content (PIC) = 0.41 Developing laboratory = IPK (A. Graner)
Probe	GBM1123
Locus	GBM1123 GBM1123-3H
Reference	Hayden MJ et al. (2008) Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping BMC Genomics 9:80. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Varshney RK et al. (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome Theoretical and Applied Genetics 113:239-250.
Remarks	Clone HI01P22T
Type	SSR
PCR primers	CTCCCTGCTTGAGCTTTGG ACCTTCGATCTTCTGGAGCA Forward CTCCCTGCTTGAGCTTTGG Reverse ACCTTCGATCTTCTGGAGCA
Amplification Conditions	3 min at 94 deg C; 45 cycles with 30 sec at 94 deg C, 30 sec at 60 deg C (touchdown of 0.5 deg C / cycle for initial 10 cycles - final annealing of 55 deg C for remaining 35 cycles), 30 sec at 72 deg C; and a final extension step of 5 min at 72 deg C
Sequence	BQ462783
DNA Library	IPK-HI
Source Species	Hordeum vulgare
Source Germplasm	Barke (barley)