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GrainGenes Marker Report: GBM1272

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Locus	GBM1272
Type	Microsatellite
Chromosome	1H
Map	Barley-ConsensusFHB-1H 104.94 Hordeum-Consensus2007-SSR-1H 99.67 Hv-Integrated2009-1H 101.3
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Map Data	Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009
Species	Hordeum vulgare
Probe	GBM1272
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Varshney RK et al. (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome Theoretical and Applied Genetics 113:239-250.
Remark	[ Hide all but 1 of 6 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (TGA)8 Polymorphic Information Content (PIC) = 0.41 Developing laboratory = IPK (A. Graner)
Probe	GBM1272
Locus	GBM1272 GBM1272-1H
Reference	Hayden MJ et al. (2008) Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping BMC Genomics 9:80. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Varshney RK et al. (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome Theoretical and Applied Genetics 113:239-250.
Remarks	Clone HW07K15u
Type	SSR
PCR primers	CCGTCCAAAGGGTTTTGATT CTCTGTAAAGGGAGGCAACG Forward CCGTCCAAAGGGTTTTGATT Reverse CTCTGTAAAGGGAGGCAACG
Amplification Conditions	3 min at 94 deg C; 45 cycles with 30 sec at 94 deg C, 30 sec at 60 deg C (touchdown of 0.5 deg C / cycle for initial 10 cycles - final annealing of 55 deg C for remaining 35 cycles), 30 sec at 72 deg C; and a final extension step of 5 min at 72 deg C
Sequence	AL502462
DNA Library	IPK-HW
Source Species	Hordeum vulgare
Source Germplasm	Barke (barley)