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GrainGenes Marker Report: GBM1480

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Locus	GBM1480
Type	Microsatellite
Chromosome	1H
Map	Barley-ConsensusFHB-1H 60.2 Hordeum-Consensus2007-SSR-1H 63.3 Hv-Consensus2006-Marcel-1H 63.3 Hv-Integrated2009-1H 64.4
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Map Data	Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, Vada x SusPtrit
Species	Hordeum vulgare
Probe	GBM1480
Reference	Marcel TC et al. (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theoretical and Applied Genetics 114:487-500. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Remark	[ Hide all but 1 of 8 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Vada x SusPtrit Map position not determined on Vada x SusPtrit map Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Vada x SusPtrit Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : SusPtrit x Vada Insert contains repeat (CT)11 Polymorphic Information Content (PIC) = 0.44 Developing laboratory = WUR (R. Niks)
Probe	GBM1480
Locus	GBM1480
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Varshney RK et al. (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome Theoretical and Applied Genetics 113:239-250.
Remarks	Primer sequences for this Microsatellite to be released in the public domain soon (noted: September 2006). Those interested should contact Andreas Graner
Type	PCR SSR
PCR primers	TCTCTCTGTCCTTGGGTTGC GCTTTTCGGCTCTCCTTTTT
Source Species	Hordeum vulgare