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GrainGenes Marker Report: GBM5230

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Locus	GBM5230
Type	Microsatellite
Chromosome	2H
Map	Barley-ConsensusFHB-2H 72.97 Hordeum-Consensus2007-SSR-2H 65.16 Hv-Consensus2006-Marcel-2H 65.16 Hv-Integrated2009-2H 63.1 Hv-L94/Vada-2006-2H 75.7
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Map Data	Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, L94 x Vada, 2006
Species	Hordeum vulgare
Probe	GBM5230
Reference	Marcel TC et al. (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theoretical and Applied Genetics 114:487-500. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Remark	[ Hide all but 1 of 7 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L94 x Vada Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : L94 x Vada Insert contains repeat (AT)6 Polymorphic Information Content (PIC) = 0.44 Developing laboratory = WUR (R. Niks)
Probe	GBM5230
Locus	GBM5230
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Remarks	Primer sequences for this SSR to be released in the public domain soon (noted: September 2006). Those interested should contact Andreas Graner
Type	SSR
PCR primers	GAACCGTTCCCTTGCAGTTA GAAAAGGCTGGTCGATTCAA
Source Species	Hordeum vulgare