GrainGenes Marker Report: GMS116A
Locus
GMS116A
Type
Microsatellite
Chromosome
3H
Map
Hordeum-Consensus2007-SSR-3H 69.16 Hv-Integrated2009-3H 80.1
[ Show Nearby Loci ]
Map Data
Barley, Consensus 2007, SSR Barley, Integrated, Marcel 2009
Species
Hordeum spontaneum Hordeum vulgare
Probe
GMS116
Reference
Remark
[ Hide all but 1 of 6 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Steptoe x Morex, Lina x H. spontaneum Insert contains repeat (CA)16n(CA)4 Polymorphic Information Content (PIC) = 0.48 Developing laboratory = IPK (D. Struss)
Probe for Locus
GMS116
Locus
GMS0116 GMS116 GMS116A
Reference
Hearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391.
Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Struss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
General Remarks
Annealing temperature = 55 deg C Insert contains repeat (ca)16ctg(ca)4
Type
SSR
PCR primers
5' GAAAGACTGACAGGCGGAAG
5' TTTCTTTGTTGTGTGTGCAGTG GAAAGACTGACAGGCGGAAG
TTTCTTTGTTGTGTGTGCAGTG
SSR size
138
GrainGenes Marker Report: GMS116A
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