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GrainGenes Marker Report: Glu-A3 (Triticum)

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Gene	Glu-A3 (Triticum)
Synonym	Synonym Glu-A3
Gene Class	Glutenins
Orthologous Gene Set	Glu-3
Allele	Glu-A3a (Triticum) [ Show all 7 ]
Locus	Glu-A3 LMWa-1A
Candidate Locus	TraesCS1A02G008000.1 XGlu3 Xpsp1(Glu-3)-1A Xpsp2999(Glu-3)-1A Xpsr11(Glu-3)-1A
Reference	Cheng S et al. (2024) Harnessing Landrace Diversity Empowers Wheat Breeding for Climate Resilience Nature. Rasheed A et al. (2023) Genome-Informed Discovery of Genes and Framework of Functional Genes in Wheat The Wheat Genome 9. Singh NK and Shepherd KW (1988) Linkage mapping of genes controlling endosperm storage proteins in wheat. 1. Genes on the short arms of group 1 chromosomes Theoretical and Applied Genetics 75:628-641. Gupta RB and Shepherd KW (1988) Low-molecular weight glutenin subunits in wheat: their variation inheritance and association with bread-making quality. Proceedings of the 7th International Wheat Genetics Symposium 943-949. Gupta RB et al. (1988) The cumulative effect of allelic variation in LMW and HMW glutenin subunits on dough properties in the progeny of two bread wheats. Theoretical and Applied Genetics 77:57-64.
Chromosome	1A Singh NK and Shepherd KW (1988) Linkage mapping of genes controlling endosperm storage proteins in wheat. 1. Genes on the short arms of group 1 chromosomes Theoretical and Applied Genetics 75:628-641.
Chromosome Arm	1AS Singh NK and Shepherd KW (1988) Linkage mapping of genes controlling endosperm storage proteins in wheat. 1. Genes on the short arms of group 1 chromosomes Theoretical and Applied Genetics 75:628-641.
Germplasm	Hexaploid stock Chinese Spring
Comment	Multiple alleles have been observed (328) and effects of allelic differences on bread making quality noted (331).
Clone	TraesCS1A02G008000
Sequence	TraesCS1A02G008000.1
Wheat Gene Catalog Reference	328 Gupta RB and Shepherd KW (1988) Low-molecular weight glutenin subunits in wheat: their variation inheritance and association with bread-making quality. Proceedings of the 7th International Wheat Genetics Symposium 943-949. 331 Gupta RB et al. (1988) The cumulative effect of allelic variation in LMW and HMW glutenin subunits on dough properties in the progeny of two bread wheats. Theoretical and Applied Genetics 77:57-64.
Info Source	McIntosh RA et al. (1995) Catalogue of gene symbols for wheat. Proceedings of the 8th International Wheat Genetics Symposium 1333-1500.
Data Curator	Hart, Gary E. 95.08.24
Locus Associated with Gene	Glu-A3
Type	Gene
Chromosome	1A
Chromosome Arm	1AS
Map	Ta-SSR-2004-1A 0 Triticum-Genes-1A -59.4 Wheat-2014-Consensus-Ug99-Update_1A 15.27 Wheat_Consensus_2014_Ug99_Rust_1A 15.27
	[ Show Nearby Loci ]
Map Data	Wheat genes Wheat, Consensus SSR, 2004 Wheat-2014-Consensus-Ug99-Update Wheat_Consensus_2014_Ug99_Rust
Probe	GLU A3a [ Show all 8 ]
Associated Gene	Glu-A3 (Triticum)
Gene Class	Glutenins
Reference	Wang LH et al. (2010) Development of STS markers and establishment of multiplex PCR for Glu-A3 alleles in common wheat (Triticum aestivum L.) Journal of Cereal Science 51:305-312. Somers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114. MAS Wheat. Functional Markers for processing quality genes in wheat MAS Wheat. Marker Assisted Selection in Wheat.
Possible Orthologs	Glu-3 [ Show all 17 ]
Locus Associated with Gene	LMWa-1A
Type	Gene
Chromosome	1A
Chromosome Arm	1AS
Map	Tt-Oxd-QTL-1A 18.7
	[ Show Nearby Loci ]
Map Data	T. turgidum, Omrabi5 x dicoccoides, QTL
Associated Gene	Glu-A3 (Triticum)
Gene Class	Glutenins
Locus Candidate for Gene	TraesCS1A02G008000.1
Type	gene
Synonym	Synonym TraesCS1A03G0021500
Chromosome	1A
Species	Triticum aestivum
Probe	TraesCS1A02G008000
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
Locus Candidate for Gene	XGlu3
Type	RFLP
Chromosome	1A
Chromosome Arm	1AS 1S
Map	1AS, T.m. G1777 x G2528 -44.2 [ Show all 10 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 10 ] 1AS, T.m. G1777 x G2528  Mapped_with_probe  pTdUCD1 1AS, T.m. G3116 x DV92  Mapped_with_probe  pTdUCD1 1BS, CS x CNN  Mapped_with_probe  pTdUCD1 1BS, durum x dicoccoides  Mapped_with_probe  pTdUCD1 T. monococcum, DV92 x G3116  Mapped_with_probe  pTdUCD1 T. monococcum, G1777 x G2528 Triticeae consensus Triticum, CS-G1777 DS1A^m^(1A) RSL Wheat, Composite, 2004 Wheat, CS x CS-CNN DS1A
Probe	pTdUCD1
Associated Gene	Glu-B3 (Triticum) Glu-D3 (Triticum)
Candidate Gene	Glu-A3 (Triticum)
Gene Class	Glutenins
Locus Candidate for Gene	Xpsp1(Glu-3)-1A
Type	STS
Chromosome	1A
Chromosome Arm	1AS
Map	Ta-Gale-1A -42.9
	[ Show Nearby Loci ]
Map Data	Wheat, Gale
Probe	PSP1
Candidate Gene	Glu-A3 (Triticum)
Possible Orthologs	Glu-3 [ Show all 17 ]
Locus Candidate for Gene	Xpsp2999(Glu-3)-1A
Type	Microsatellite STS
Chromosome	1A
Chromosome Arm	1AS
Map	Ta-Gale-1A -42.9
	[ Show Nearby Loci ]
Map Data	Wheat, Gale
Species	Triticum aestivum
Probe	PSP2999F/PSP2999R
Candidate Gene	Glu-A3 (Triticum)
Reference	Stephenson P et al. (1998) Fifty new microsatellite loci for the wheat genetic map. Theoretical and Applied Genetics 97:946-949. Devos KM et al. (1995) Application of two microsatellite sequences in wheat storage proteins as molecular markers. Theoretical and Applied Genetics 90:247-252.
Remark	Quality score = 1 (single product recognizing a single locus, little or no stuttering)
Possible Orthologs	Glu-3 [ Show all 17 ]
Locus Candidate for Gene	Xpsr11(Glu-3)-1A
Type	RFLP
Synonym	Other name XGli-1A McIntosh RA et al. (1995) Catalogue of gene symbols for wheat. Proceedings of the 8th International Wheat Genetics Symposium 1333-1500.
Chromosome	1A
Chromosome Arm	1AS
Map	Ta-Gale-1A -42.8 Ta-Synthetic/Opata-BARC-1A 5.1
	[ Show Nearby Loci ]
Map Data	Wheat, Gale Wheat, Synthetic x Opata, BARC
Species	Triticum aestivum
Probe	PSR11 pTag544 Bartels D et al. (1986) Molecular analysis of c-gliadin gene families at the complex Gli-1 locus of bread wheat (T. aestivum L.). Theoretical and Applied Genetics 72:845-853.
Candidate Gene	Glu-A3 (Triticum)
Reference	Harberd NP et al. (1985) Analysis of the gliadin multigene loci in bread wheat using nullisomic-tetrasomic lines. Molecular and General Genetics 198:234-242.
Possible Orthologs	Glu-3 [ Show all 17 ]

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