GrainGenes Marker Report: HVCSG
Locus
HVCSG
Type
Microsatellite
Chromosome
2 (2H) 2H
Map
Barley, B73xCPI-2H 157.3
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
[ Hide all but 1 of 7 ] Barley consensus 2003 Barley, AxHs/QTL Barley, B73xCPI Barley, BinMap 2005 Barley, Consensus 2006, DArT Barley, Integrated, Marcel 2009 Barley, TxE
Probe
HVCSG
Reference
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris Langridge, Peter J.
Remark
Number of populations contributing to the placement of HvCSG in the Barley, Consensus 2006 DArT maps = 1 This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Nure x Tremois
Probe
HVCSG
Locus
HVCSG
Reference
Remarks
PCR size is expected size (kb) based on published sequence. Insert contains repeats (GT)4 and (G)17.
Type
PCR SSR
PCR primers
5' CACTTGCCTACCTCGATATAGTTTGC 3'
5' GTGGATTCCATGCATGCAATATGTGG 3'
SSR size
0.196
Sequence
X58339
Source Gene Class
Chalcone synthase
Source Species
Hordeum vulgare
GrainGenes Marker Report: HVCSG
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