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GrainGenes Marker Report: Hor1 (Hordeum)

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Gene	Hor1 (Hordeum)
Gene Class	C-Hordein Hordeins
Locus	HOR-1 Hor1 HorC
Candidate Locus	Hor1
Reference	Entwistle J (1988) Primary structure of a C hordein gene from barley Carlsberg Research Communications 53:247-258.
Gene Product	C hordein
Chromosome	1H
Chromosome Arm	1HS
Clone	lambda-hor1-14 lambda-hor1-17 pc hor1-3 pc P387 pc-919
Sequence	M36941
Data Source	Karakousis, Angelo 96.10
Info Source	von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Locus Associated with Gene	HOR-1
Type	Gene
Chromosome	1H
Map	Hordeum-Heun-1H 21.8
	[ Show Nearby Loci ]
Map Data	Barley, PxN
Probe	Hor1
Associated Gene	Hor1 (Hordeum)
Gene Class	C-Hordein Hordeins
Possible Orthologs	Hor1
Locus Associated with Gene	Hor1
Type	Gene RFLP
Synonym	Synonym Hor1 (Hordeum)
Chromosome	1H
Chromosome Arm	1HS
Map	Barley-Consensus-1H -24.2 [ Show all 27 ]
	[ Show Nearby Loci ]
In QTL	QDp.BlE2-1H [ Show all 7 ]
Map Data	[ Hide all but 1 of 27 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley genes Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, CxH  Mapped_with_probe  Hor 1&2 Barley, CxS  Mapped_with_probe  Hor 1&2 Barley, GxH  Mapped_with_probe  Hor 1&2 Barley, Integrated, Marcel 2009 Barley, IxF Barley, IxT/QTL  Mapped_by_function  Hor1 (Hordeum) Barley, KxM  Mapped_with_probe  pc P387 Barley, Nure x Tremois Barley, physical Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs Barley, VGxA Barley, VGxTP Barley, Wise
2 Point Data	Hor1/Glu.c1 Mla6/Hor1
Probe	Hor 1&2 Hor1 pc P387
Associated Gene	Hor1 (Hordeum)
Candidate Gene	Hor1 (Hordeum)
Gene Class	C-Hordein Hordeins
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of Hor1 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka,Nure x Tremois Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	HOR-1
Locus Associated with Gene	HorC
Type	Gene
Map	Hordeum-DxM-1H 23.5
	[ Show Nearby Loci ]
Map Data	Barley, Dicktoo x Morex
Associated Gene	Hor1 (Hordeum)
Gene Class	C-Hordein Hordeins
Locus Candidate for Gene	Hor1
Type	Gene RFLP
Synonym	Synonym Hor1 (Hordeum)
Chromosome	1H
Chromosome Arm	1HS
Map	Barley-Consensus-1H -24.2 [ Show all 27 ]
	[ Show Nearby Loci ]
In QTL	QDp.BlE2-1H [ Show all 7 ]
Map Data	[ Hide all but 1 of 27 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley genes Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, CxH  Mapped_with_probe  Hor 1&2 Barley, CxS  Mapped_with_probe  Hor 1&2 Barley, GxH  Mapped_with_probe  Hor 1&2 Barley, Integrated, Marcel 2009 Barley, IxF Barley, IxT/QTL  Mapped_by_function  Hor1 (Hordeum) Barley, KxM  Mapped_with_probe  pc P387 Barley, Nure x Tremois Barley, physical Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs Barley, VGxA Barley, VGxTP Barley, Wise
2 Point Data	Hor1/Glu.c1 Mla6/Hor1
Probe	Hor 1&2 Hor1 pc P387
Associated Gene	Hor1 (Hordeum)
Candidate Gene	Hor1 (Hordeum)
Gene Class	C-Hordein Hordeins
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of Hor1 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka,Nure x Tremois Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	HOR-1
Locus	Hor1 (Hordeum)
Synonym	Synonym Hor1

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