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GrainGenes Marker Report: HvKNOX3

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Locus	HvKNOX3
Type	Gene IFLP Microsatellite STS
Synonym	Synonym Kap (Hordeum)
Chromosome	4H 4H + 7H
Map	Barley-ConsensusFHB-4H 48.01 [ Show all 13 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 13 ]
Species	Hordeum vulgare
Probe	hvKnox 3B/3C HvKNOX3
Associated Gene	Kap (Hordeum)
Gene Class	Hooded/elevated hooded/awned lemma
Image	PCR of Hvknox3 in the OWBs
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. [ Show all 7 ]
Remark	[ Hide all but 1 of 9 ] Assigned to a barley chromosome by PCR screening of wheat barley addition lines Number of populations contributing to the placement of HvKNOX3 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (AG)10 Developing laboratory = SCRI (R. Waugh) hvknox3 was mapped as an intron fragment length polymorphism (IFLP), detecting a 305-bp duplication in intron 4 of the Knox3 homeobox gene. This duplication gives rise to the Hooded mutation.
Probe for Locus	hvKnox 3B/3C
Locus	HvKNOX3
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Type	PCR
PCR primers	3B 5' CCCCTCAAAGTTCAGGTCAATCCT 3C 5' ACATCAATCAGAAAAGAAAGCATT