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GrainGenes Marker Report: Ica1 (Hordeum)

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Gene	Ica1 (Hordeum)
Gene Class	Inhibitor of chymotrypsin and Aspergillus protease
Locus	Ica1
Candidate Locus	Ica1
Reference	Cannell M et al. (1992) Chromosomal assignment of genes in barley using telosomic wheat-barley addition lines. Genome 35:17-23.
Chromosome	1H
Clone	[ Hide all but 1 of 8 ] pCI1-14 pCI1-21 pCI1-27 pCI1-28 pCI1-39 PCI1-4 pCI1-6 pCI1-7
Info Source	von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Locus Associated with Gene	Ica1
Type	Gene RFLP
Synonym	Synonym Ica1 (Hordeum)
Chromosome	1H
Chromosome Arm	1HS
Map	Barley-Consensus-1H 0 [ Show all 21 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus [ Show all 21 ]
Species	Hordeum vulgare
Probe	pc1 12 PCI1-2 PCI1-4 PCl1-2
Associated Gene	Ica1 (Hordeum)
Candidate Gene	Ica1 (Hordeum)
Gene Class	Inhibitor of chymotrypsin and Aspergillus protease
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Number of populations contributing to the placement of Ica1 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	Xpsr884(Ica1)-1A Xpsr884(Ica1)-1B Xpsr884(Ica1)-1D
Locus Candidate for Gene	Ica1
Type	Gene RFLP
Synonym	Synonym Ica1 (Hordeum)
Chromosome	1H
Chromosome Arm	1HS
Map	Barley-Consensus-1H 0 [ Show all 21 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus [ Show all 21 ]
Species	Hordeum vulgare
Probe	pc1 12 PCI1-2 PCI1-4 PCl1-2
Associated Gene	Ica1 (Hordeum)
Candidate Gene	Ica1 (Hordeum)
Gene Class	Inhibitor of chymotrypsin and Aspergillus protease
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Number of populations contributing to the placement of Ica1 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	Xpsr884(Ica1)-1A Xpsr884(Ica1)-1B Xpsr884(Ica1)-1D
Locus	Ica1 (Hordeum)
Synonym	Synonym Ica1

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