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GrainGenes Marker Report: Kap (Hordeum)

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Gene	Kap (Hordeum)
Full Name	Hooded lemma
Synonym	Synonym K K/K^e^/k (Hordeum) von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Gene Class	Hooded/elevated hooded/awned lemma
Allele	Kap (Hordeum) kap (Hordeum)
Locus	HvKNOX3 Kap X83518
Reference	Mueller KJ et al. (1995) The barley Hooded mutation caused by a duplication in a homeobox gene intron Nature 347:727-730.
Gene Product	Knox3
Chromosome	4H
Clone	HvKNOX3
Sequence	X83518
Image	Barley, kap (awned) phenotype [ Show all 7 ]
Data Source	Franckowiak, Jerome D. 96.10
Locus Associated with Gene	HvKNOX3
Type	Gene IFLP Microsatellite STS
Synonym	Synonym Kap (Hordeum)
Chromosome	4H 4H + 7H
Map	Barley-ConsensusFHB-4H 48.01 [ Show all 13 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 13 ]
Species	Hordeum vulgare
Probe	hvKnox 3B/3C HvKNOX3
Associated Gene	Kap (Hordeum)
Gene Class	Hooded/elevated hooded/awned lemma
Image	PCR of Hvknox3 in the OWBs
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. [ Show all 7 ]
Remark	[ Hide all but 1 of 9 ] Assigned to a barley chromosome by PCR screening of wheat barley addition lines Number of populations contributing to the placement of HvKNOX3 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (AG)10 Developing laboratory = SCRI (R. Waugh) hvknox3 was mapped as an intron fragment length polymorphism (IFLP), detecting a 305-bp duplication in intron 4 of the Knox3 homeobox gene. This duplication gives rise to the Hooded mutation.
Locus Associated with Gene	Kap
Type	Gene
Map	Hordeum-Bins-4H 29 Hordeum-Genes2-4H 33
	[ Show Nearby Loci ]
Map Data	Barley genes 2 Barley, BinMap 2005
Associated Gene	Kap (Hordeum)
Gene Class	Hooded/elevated hooded/awned lemma
Data Source	Kleinhofs, Andris
Remark	This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Locus Associated with Gene	X83518
Map	Hordeum-Bins-4H 30
	[ Show Nearby Loci ]
Map Data	Barley, BinMap 2005
Associated Gene	Kap (Hordeum)
Gene Class	Hooded/elevated hooded/awned lemma
Reference	Muller KJ et al. (1995) The barley Hooded mutation caused by a duplication in a homeobox gene intron Nature 374:727-730.
Remark	The X83518 RFLP/STS is a gene marker for the Kap (Hordeum) gene
Locus	Kap (Hordeum)
Synonym	Synonym HvKNOX3

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